Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03315.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2710
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32


Found at i:2651 original size:39 final size:39

Alignment explanation


    Indices: 2608--2686  Score: 158
    Period size: 39  Copynumber: 2.0  Consensus size: 39

       2598 TATCATTTGA

                                                   
       2608 ATGATTCATTGTCCATTGCACATCTGTAAATAAGCCTGT
          1 ATGATTCATTGTCCATTGCACATCTGTAAATAAGCCTGT

                                                   
       2647 ATGATTCATTGTCCATTGCACATCTGTAAATAAGCCTGT
          1 ATGATTCATTGTCCATTGCACATCTGTAAATAAGCCTGT

             
       2686 A
          1 A

       2687 ATTAGAAAGC


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  39   40  1.00

ACGTcount: A:0.29, C:0.20, G:0.15, T:0.35


Consensus pattern (39 bp):   
ATGATTCATTGTCCATTGCACATCTGTAAATAAGCCTGT
Done.