Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03328.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1903
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.31


Found at i:1771 original size:44 final size:45

Alignment explanation


    Indices: 1713--1802  Score: 137
    Period size: 44  Copynumber: 2.0  Consensus size: 45

       1703 TTTATTTATT

                               *       *      *          
       1713 ATATGTATATTTTTTTTCTTTGTACAATGTAACATTTTAAGAGAG
          1 ATATGTATATTTTTTTTCTATGTACAACGTAACACTTTAAGAGAG

                                          *              
       1758 ATATGTATA-TTTTTTTCTATGTACAACGTTACACTTTAAGAGAG
          1 ATATGTATATTTTTTTTCTATGTACAACGTAACACTTTAAGAGAG

             
       1802 A
          1 A

       1803 GATTCTATTT


Statistics
Matches: 41,  Mismatches: 4, Indels: 1
        0.89            0.09        0.02

Matches are distributed among these distances:
  44   32  0.78
  45    9  0.22

ACGTcount: A:0.32, C:0.09, G:0.13, T:0.46


Consensus pattern (45 bp):   
ATATGTATATTTTTTTTCTATGTACAACGTAACACTTTAAGAGAG
Done.