Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03341.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3451
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.30


Found at i:2693 original size:6 final size:6

Alignment explanation


    Indices: 2682--2708  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

       2672 ACAACTCACA

                                           
       2682 TCATCG TCATCG TCATCG TCATCG TCA
          1 TCATCG TCATCG TCATCG TCATCG TCA

       2709 CTAGGCCACC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.19, C:0.33, G:0.15, T:0.33


Consensus pattern (6 bp):   
TCATCG

Done.