Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03357.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4090
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.29


Found at i:3865 original size:5 final size:6

Alignment explanation


    Indices: 3850--3874  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

       3840 CGTATGTTGT

                                         
       3850 TTTTTA TTTTTA TTTTTA TTTTTA T
          1 TTTTTA TTTTTA TTTTTA TTTTTA T

       3875 ATATACATAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84


Consensus pattern (6 bp):   
TTTTTA

Done.