Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03362.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 786

Length: 1310
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27


Found at i:45 original size:18 final size:18

Alignment explanation


    Indices: 3--44  Score: 59
    Period size: 18  Copynumber: 2.4  Consensus size: 18

          1 TT

                             *
          3 AAAAAAATTACAACGAAC
          1 AAAAAAATTACAACGAAA

                      *       
         21 AAAAAAATTAGAA-GAAA
          1 AAAAAAATTACAACGAAA

                   
         38 AAAAAAA
          1 AAAAAAA

         45 AGGGATATGA


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  17   10  0.45
  18   12  0.55

ACGTcount: A:0.76, C:0.07, G:0.07, T:0.10


Consensus pattern (18 bp):   
AAAAAAATTACAACGAAA
Done.