Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03384.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 925

Length: 1542
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35


Found at i:1381 original size:33 final size:33

Alignment explanation


    Indices: 1342--1407  Score: 96
    Period size: 33  Copynumber: 2.0  Consensus size: 33

       1332 TTCATCGCAG

                       * * *                 
       1342 ACCTTCAAATTTTTCTCTTAGATTATGTTTGTT
          1 ACCTTCAAATTGTACACTTAGATTATGTTTGTT

                   *                         
       1375 ACCTTCATATTGTACACTTAGATTATGTTTGTT
          1 ACCTTCAAATTGTACACTTAGATTATGTTTGTT

       1408 TGGTCGTTGG


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  33   29  1.00

ACGTcount: A:0.23, C:0.15, G:0.11, T:0.52


Consensus pattern (33 bp):   
ACCTTCAAATTGTACACTTAGATTATGTTTGTT

Found at i:1467 original size:9 final size:9

Alignment explanation


    Indices: 1453--1477  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       1443 TCCCTTTCTT

                     
       1453 TTTTTTTTC
          1 TTTTTTTTC

                     
       1462 TTTTTTTTC
          1 TTTTTTTTC

                   
       1471 TTTTTTT
          1 TTTTTTT

       1478 AATATTATTG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92


Consensus pattern (9 bp):   
TTTTTTTTC
Done.