Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03410.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3147
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30


Found at i:2044 original size:18 final size:19

Alignment explanation


    Indices: 2021--2058  Score: 51
    Period size: 21  Copynumber: 1.9  Consensus size: 19

       2011 GCTTTCTGAG

                               
       2021 GCTTCT-TTAGGGCTCTCT
          1 GCTTCTCTTAGGGCTCTCT

                                
       2039 GCTTCTACCTTAGGGCTCTC
          1 GCTTCT--CTTAGGGCTCTC

       2059 AGGCGGTGTC


Statistics
Matches: 17,  Mismatches: 0, Indels: 3
        0.85            0.00        0.15

Matches are distributed among these distances:
  18    6  0.35
  21   11  0.65

ACGTcount: A:0.08, C:0.32, G:0.21, T:0.39


Consensus pattern (19 bp):   
GCTTCTCTTAGGGCTCTCT

Found at i:3000 original size:14 final size:14

Alignment explanation


    Indices: 2981--3025  Score: 51
    Period size: 14  Copynumber: 3.4  Consensus size: 14

       2971 CTCCGTTCAC

                          
       2981 ATTTCAGGATTCTG
          1 ATTTCAGGATTCTG

                        **
       2995 ATTTC---ATTCAC
          1 ATTTCAGGATTCTG

                          
       3006 ATTTCAGGATTCTG
          1 ATTTCAGGATTCTG

                  
       3020 ATTTCA
          1 ATTTCA

       3026 TGTGCTGTAC


Statistics
Matches: 24,  Mismatches: 4, Indels: 6
        0.71            0.12        0.18

Matches are distributed among these distances:
  11    9  0.38
  14   15  0.62

ACGTcount: A:0.24, C:0.18, G:0.13, T:0.44


Consensus pattern (14 bp):   
ATTTCAGGATTCTG

Found at i:3004 original size:25 final size:25

Alignment explanation


    Indices: 2976--3026  Score: 102
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       2966 ACGAACTCCG

                                     
       2976 TTCACATTTCAGGATTCTGATTTCA
          1 TTCACATTTCAGGATTCTGATTTCA

                                     
       3001 TTCACATTTCAGGATTCTGATTTCA
          1 TTCACATTTCAGGATTCTGATTTCA

             
       3026 T
          1 T

       3027 GTGCTGTACC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   26  1.00

ACGTcount: A:0.24, C:0.20, G:0.12, T:0.45


Consensus pattern (25 bp):   
TTCACATTTCAGGATTCTGATTTCA
Done.