Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03411.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 673

Length: 1122
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30


Found at i:517 original size:15 final size:15

Alignment explanation


    Indices: 494--527  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        484 GGTTTTAATA

                *     *    
        494 GCGGTTATGGCGGTG
          1 GCGGATATGGAGGTG

                           
        509 GCGGATATGGAGGTG
          1 GCGGATATGGAGGTG

                
        524 GCGG
          1 GCGG

        528 TGGCGGCTAT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.12, C:0.12, G:0.56, T:0.21


Consensus pattern (15 bp):   
GCGGATATGGAGGTG

Found at i:527 original size:21 final size:21

Alignment explanation


    Indices: 501--580  Score: 88
    Period size: 21  Copynumber: 3.8  Consensus size: 21

        491 ATAGCGGTTA

                        *        
        501 TGGCGGTGGCGGATATGGAGG
          1 TGGCGGTGGCGGCTATGGAGG

                              *  
        522 TGGCGGTGGCGGCTATGGTGG
          1 TGGCGGTGGCGGCTATGGAGG

            *   *    *           
        543 GGGCAGTGGTGGCTATGGAGG
          1 TGGCGGTGGCGGCTATGGAGG

               *  *  *       
        564 TGGTGGGGGGGGCTATG
          1 TGGCGGTGGCGGCTATG

        581 ACAGAAATGA


Statistics
Matches: 48,  Mismatches: 11, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  21   48  1.00

ACGTcount: A:0.10, C:0.10, G:0.59, T:0.21


Consensus pattern (21 bp):   
TGGCGGTGGCGGCTATGGAGG
Done.