Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga11g03421.M1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7901
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.29
Found at i:164 original size:93 final size:93
Alignment explanation
Indices: 5--234 Score: 347
Period size: 93 Copynumber: 2.5 Consensus size: 93
1 AAAT
* * **
5 CAAGCCAGAGCAGAAAGATAT-CTCGAGAGAGGATGTAGATTCCCATGTGCTGGATGGAAAGGTG
1 CAAGCCAGAGCAGAAAGATATCCT-GAGGGAGGATGTAGATCCCCATGCACTGGATGGAAAGGTG
69 GATTA-CACCAGTCAGATAGGTCATCAAAA
65 GATTATCA-CAGTCAGATAGGTCATCAAAA
98 CAAGCCAGAGCAGAAAGATATCCTGAGGGAGGATGTAGATCCCCATGCACTGGATGGAAAGGTGG
1 CAAGCCAGAGCAGAAAGATATCCTGAGGGAGGATGTAGATCCCCATGCACTGGATGGAAAGGTGG
* * *
163 ATTATGACAGTCAGATAGTTCATGAAAA
66 ATTATCACAGTCAGATAGGTCATCAAAA
* *
191 CAAGCCAGAGCAGAAAGATATCTTGAGGGAAGATGTAGATCCCC
1 CAAGCCAGAGCAGAAAGATATCCTGAGGGAGGATGTAGATCCCC
235 TTAGAATTCA
Statistics
Matches: 126, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
93 123 0.98
94 3 0.02
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (93 bp):
CAAGCCAGAGCAGAAAGATATCCTGAGGGAGGATGTAGATCCCCATGCACTGGATGGAAAGGTGG
ATTATCACAGTCAGATAGGTCATCAAAA
Found at i:957 original size:54 final size:54
Alignment explanation
Indices: 875--986 Score: 161
Period size: 54 Copynumber: 2.1 Consensus size: 54
865 GAGCTGTGAT
* * *
875 TTCAAAGGATGTTTCATCCAAGCAAAAAGTTCAGAAGGTTGACGATACAAAGAC
1 TTCAAAGGATGTTTCATCCAAGCAAAAAGGTCAAAAGGTTGACCATACAAAGAC
* * * *
929 TTCAAAGGATTTTTCATCCGAGCAAAAAGGTCAAAAGGTTGACCTTACAAAGCC
1 TTCAAAGGATGTTTCATCCAAGCAAAAAGGTCAAAAGGTTGACCATACAAAGAC
983 TTCA
1 TTCA
987 GACTATCCAA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (54 bp):
TTCAAAGGATGTTTCATCCAAGCAAAAAGGTCAAAAGGTTGACCATACAAAGAC
Found at i:2595 original size:45 final size:45
Alignment explanation
Indices: 2531--2632 Score: 159
Period size: 45 Copynumber: 2.3 Consensus size: 45
2521 CAGCTAGTGT
* *
2531 CCCACTTCCTCCTCCACCTTCACCACCCTCATCAGCAACTACTGC
1 CCCACTTCCTCCTCCACCTTCACCACCCTCATCAACAACTACTAC
* * *
2576 CCCACATCCTCCTCCACCTTCACCACCCTCTTCAACGACTACTAC
1 CCCACTTCCTCCTCCACCTTCACCACCCTCATCAACAACTACTAC
2621 CCCACTTCCTCC
1 CCCACTTCCTCC
2633 AACCTCACCA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.20, C:0.55, G:0.03, T:0.23
Consensus pattern (45 bp):
CCCACTTCCTCCTCCACCTTCACCACCCTCATCAACAACTACTAC
Found at i:2644 original size:42 final size:44
Alignment explanation
Indices: 2507--2658 Score: 139
Period size: 45 Copynumber: 3.5 Consensus size: 44
2497 CTCCGTCTTT
* * * ** *
2507 ACCATCCTCTTCAACAGCTAGTGTCCCACTTCCTCCTCCACCTTC
1 ACCACCCTCTTCAACAACTACTACCCCACAT-CTCCTCCACCTTC
* * *
2552 ACCACCCTCATCAGCAACTACTGCCCCACATCCTCCTCCACCTTC
1 ACCACCCTCTTCAACAACTACTACCCCACAT-CTCCTCCACCTTC
*
2597 ACCACCCTCTTCAACGACTACTACCCCAC-T-TCCTCCAACC-TC
1 ACCACCCTCTTCAACAACTACTACCCCACATCTCCTCC-ACCTTC
* * *
2639 ACCACCTTTTTCAACTACTA
1 ACCACCCTCTTCAACAACTA
2659 TTGCCTTGTC
Statistics
Matches: 92, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
42 25 0.27
43 3 0.03
44 1 0.01
45 63 0.68
ACGTcount: A:0.22, C:0.49, G:0.04, T:0.25
Consensus pattern (44 bp):
ACCACCCTCTTCAACAACTACTACCCCACATCTCCTCCACCTTC
Found at i:2682 original size:84 final size:84
Alignment explanation
Indices: 2584--2814 Score: 268
Period size: 84 Copynumber: 2.8 Consensus size: 84
2574 GCCCCACATC
* * ** *
2584 CTCCTCCACCTTCACCACCCTCTTCAACGACTACTACCCCACTTCCTCCAACCTCACCACCTTTT
1 CTCCTCCATCTTCACCACCCCCACCAACGACTACTACCCCACTTCCTCCAACCTCACCACCCTTT
2649 TCAACTACTATTGCCTTGT
66 TCAACTACTATTGCCTTGT
* ** * * ***
2668 CTCCTCCATCTTCACCACCCCCACCAATGTGTAGTACTCCACTTCCTCCATTTTCACCACCCTTT
1 CTCCTCCATCTTCACCACCCCCACCAACGACTACTACCCCACTTCCTCCAACCTCACCACCCTTT
2733 TCAACTACTATTGCCTTGT
66 TCAACTACTATTGCCTTGT
* ** * *
2752 CTCCTCCATC-TCTACCACCCCCACCAATGTGTAGTACTCCACTTCCTCC-ACCTTCACCACCCT
1 CTCCTCCATCTTC-ACCACCCCCACCAACGACTACTACCCCACTTCCTCCAACC-TCACCACCCT
2815 CTTTGACTAA
Statistics
Matches: 129, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
83 2 0.02
84 127 0.98
ACGTcount: A:0.19, C:0.46, G:0.05, T:0.30
Consensus pattern (84 bp):
CTCCTCCATCTTCACCACCCCCACCAACGACTACTACCCCACTTCCTCCAACCTCACCACCCTTT
TCAACTACTATTGCCTTGT
Found at i:2715 original size:42 final size:42
Alignment explanation
Indices: 2669--2813 Score: 127
Period size: 42 Copynumber: 3.5 Consensus size: 42
2659 TTGCCTTGTC
2669 TCCTCCATCTTCACCACCCCCACCAATGTGTAGTACTCCACT
1 TCCTCCATCTTCACCACCCCCACCAATGTGTAGTACTCCACT
* **** * * * **
2711 TCCTCCATTTTCACCACCCTTTTCAA---CTACTATTGCCTTGT
1 TCCTCCATCTTCACCACCCCCACCAATGTGTAGTACT-CC-ACT
2752 CTCCTCCATC-TCTACCACCCCCACCAATGTGTAGTACTCCACT
1 -TCCTCCATCTTC-ACCACCCCCACCAATGTGTAGTACTCCACT
*
2795 TCCTCCACCTTCACCACCC
1 TCCTCCATCTTCACCACCC
2814 TCTTTGACTA
Statistics
Matches: 74, Mismatches: 21, Indels: 16
0.67 0.19 0.14
Matches are distributed among these distances:
39 5 0.07
40 2 0.03
41 3 0.04
42 54 0.73
43 3 0.04
44 2 0.03
45 5 0.07
ACGTcount: A:0.19, C:0.46, G:0.06, T:0.30
Consensus pattern (42 bp):
TCCTCCATCTTCACCACCCCCACCAATGTGTAGTACTCCACT
Found at i:2829 original size:84 final size:84
Alignment explanation
Indices: 2622--2814 Score: 327
Period size: 84 Copynumber: 2.3 Consensus size: 84
2612 GACTACTACC
*
2622 CCACTTCCTCCAACC-TCACCACCTTTTTCAACTACTATTGCCTTGTCTCCTCCATCTTCACCAC
1 CCACTTCCTCC-ACCTTCACCACCCTTTTCAACTACTATTGCCTTGTCTCCTCCATCTTCACCAC
2686 CCCCACCAATGTGTAGTACT
65 CCCCACCAATGTGTAGTACT
**
2706 CCACTTCCTCCATTTTCACCACCCTTTTCAACTACTATTGCCTTGTCTCCTCCATC-TCTACCAC
1 CCACTTCCTCCACCTTCACCACCCTTTTCAACTACTATTGCCTTGTCTCCTCCATCTTC-ACCAC
2770 CCCCACCAATGTGTAGTACT
65 CCCCACCAATGTGTAGTACT
2790 CCACTTCCTCCACCTTCACCACCCT
1 CCACTTCCTCCACCTTCACCACCCT
2815 CTTTGACTAA
Statistics
Matches: 102, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
83 3 0.03
84 99 0.97
ACGTcount: A:0.19, C:0.45, G:0.05, T:0.31
Consensus pattern (84 bp):
CCACTTCCTCCACCTTCACCACCCTTTTCAACTACTATTGCCTTGTCTCCTCCATCTTCACCACC
CCCACCAATGTGTAGTACT
Found at i:2864 original size:84 final size:85
Alignment explanation
Indices: 2622--2901 Score: 277
Period size: 84 Copynumber: 3.3 Consensus size: 85
2612 GACTACTACC
* * * * * *
2622 CCACTTCCTCCAACC-TCACCA-CCTTTTTCAACTACTATTGCCTTGTCTCCTCCATCTTCACCA
1 CCACTTCCTCC-ACCTTCACCACCCTCTTTCAACTAATATTGCCATGTCTCCTCCAGCTCCACAA
2685 CCCCCACCAATGTGTAGTACT
65 CCCCCACCAATGTGTAGTACT
** * * * * *
2706 CCACTTCCTCCATTTTCACCACCCT-TTTCAACTACTATTGCCTTGTCTCCTCCATCTCTACCAC
1 CCACTTCCTCCACCTTCACCACCCTCTTTCAACTAATATTGCCATGTCTCCTCCAGCTCCACAAC
2770 CCCCACCAATGTGTAGTACT
66 CCCCACCAATGTGTAGTACT
* *
2790 CCACTTCCTCCACCTTCACCACCCTCTTT-GACTAATATTGTCCCAT-T-TCCTCTAGCTCCACA
1 CCACTTCCTCCACCTTCACCACCCTCTTTCAACTAATATTG--CCATGTCTCCTCCAGCTCCACA
* * * *
2852 ACTCCCATCAATGTCTAGTGC-
64 ACCCCCACCAATGTGTAGTACT
* * *
2873 CTCACTTCTTCGACCTTCATCACCCTCTT
1 C-CACTTCCTCCACCTTCACCACCCTCTT
2902 CGGTTACTAG
Statistics
Matches: 170, Mismatches: 20, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
83 2 0.01
84 158 0.93
85 7 0.04
86 3 0.02
ACGTcount: A:0.19, C:0.42, G:0.06, T:0.33
Consensus pattern (85 bp):
CCACTTCCTCCACCTTCACCACCCTCTTTCAACTAATATTGCCATGTCTCCTCCAGCTCCACAAC
CCCCACCAATGTGTAGTACT
Found at i:3185 original size:216 final size:207
Alignment explanation
Indices: 2979--3687 Score: 673
Period size: 198 Copynumber: 3.4 Consensus size: 207
2969 CTCGTTTCCT
* * * *
2979 CCTCCATCTTCGCCACCCTCCTTGATGACTAGTGCCCCACCTCCTCCATCTCCACTACCCCCATC
1 CCTCC-TCTTCACCAACCTCCTTGACGACTAGTGCCCCACCTCCTCCATCTCCACCACCCCCATC
* * * * *
3044 AATTTCTAGCACCCCACCTCCTCCCCCATCGGTATCTACTGCTCCACTTCCTCTTTCACCTTCAC
65 AATATCTAGCACCCCACCTCCTCCCCCATCGATGTCTACTGCTTCAATTCCTCTTTCACCTTCAC
*
3109 AAACCACTTTGATGACTAGTGGCCCACCTCCTTCACCTTCACTACCATCTCCACCTCCCACATTG
130 AAACCACTTTGATGACTAGT-GCCCACCTCCTCCACCTTC-CTACCATCTCCACCTCCCACATTG
*
3174 ATGTCTA-CTGCCCCA
193 ATGTCTAGC-ACCCCA
* * * * * ***
3189 CTTCCTCCTCCACCTTCACCACCCTCTGCAACGACTAGTGCCCCACCTCTTTTGTCTCCACCACC
1 CCTCCT-CTTCACC--AACC-TCCT-TG--ACGACTAGTGCCCCACCTCCTCCATCTCCACCACC
* * * * * * * *
3254 CCTATCAATATCTAGCATCCAACCTCTTCCCTCATCGATGTCTACTACTTTAATTCCT-TGTTCT
59 CCCATCAATATCTAGCACCCCACCTCCTCCCCCATCGATGTCTACTGCTTCAATTCCTCT-TTCA
* * ** *
3318 TCTTCACCAACCACTTTGACAACTAGTGCCCTACCTCCTCCATC-TCC-ACCA-C-CC-CCGT--
123 CCTTCACAAACCACTTTGATGACTAGTGCCC-ACCTCCTCCACCTTCCTACCATCTCCACC-TCC
3376 CA-A-T-A--TCTAGCACCCCA
186 CACATTGATGTCTAGCACCCCA
* * *
3393 CCTCCTCTTTCACCAACC-ACTTCGATGACTAGTACCCCACCTCCTCCATCTCCACCACCCCCAT
1 CCTCCTC-TTCACCAACCTCCTT-GACGACTAGTGCCCCACCTCCTCCATCTCCACCACCCCCAT
* * * *
3457 CAATATCTAGCACCCCACCTTCTCCCCCATCTATGTCTAATGCTTCAATTCCTCCTTCACCTTCA
64 CAATATCTAGCACCCCACCTCCTCCCCCATCGATGTCTACTGCTTCAATTCCTCTTTCACCTTCA
* * * *
3522 CCAAA-TACTTTGATGACTAGTGCGCTACCTCCTCCACCTT-CT-CCATCTCCACCACCC-CATC
129 -CAAACCACTTTGATGACTAGTGC-CCACCTCCTCCACCTTCCTACCATCTCCACCTCCCACATT
* *
3583 AATATCTAGCACCCCA
192 GATGTCTAGCACCCCA
* * * *
3599 CCTCCTCCTTCAACAACCACTTTGACGACTAGTGCCCCACCTTCTCCATCTCCACCACCCCCATC
1 CCTCCT-CTTCACCAACCTCCTTGACGACTAGTGCCCCACCTCCTCCATCTCCACCACCCCCATC
3664 AATATCTAGCACCCCACCTCCTCC
65 AATATCTAGCACCCCACCTCCTCC
3688 TTCAACAACC
Statistics
Matches: 399, Mismatches: 70, Indels: 64
0.75 0.13 0.12
Matches are distributed among these distances:
198 115 0.29
199 7 0.02
200 5 0.01
201 2 0.01
202 5 0.01
203 1 0.00
204 20 0.05
205 1 0.00
206 90 0.23
207 4 0.01
208 1 0.00
209 3 0.01
210 11 0.03
211 3 0.01
212 3 0.01
213 7 0.02
214 3 0.01
215 7 0.02
216 111 0.28
ACGTcount: A:0.21, C:0.46, G:0.07, T:0.27
Consensus pattern (207 bp):
CCTCCTCTTCACCAACCTCCTTGACGACTAGTGCCCCACCTCCTCCATCTCCACCACCCCCATCA
ATATCTAGCACCCCACCTCCTCCCCCATCGATGTCTACTGCTTCAATTCCTCTTTCACCTTCACA
AACCACTTTGATGACTAGTGCCCACCTCCTCCACCTTCCTACCATCTCCACCTCCCACATTGATG
TCTAGCACCCCA
Found at i:3396 original size:42 final size:42
Alignment explanation
Indices: 3350--3481 Score: 155
Period size: 42 Copynumber: 3.2 Consensus size: 42
3340 CTAGTGCCCT
*
3350 ACCTCCTCCATCTCCACCACCCCCGTCAATATCTAGCACCCC
1 ACCTCCTCCATCTCCACCACCCCCATCAATATCTAGCACCCC
* * * * * *
3392 ACCTCCT-C-T-TTCACCAACCACTTCGATGA-CTAGTACCCC
1 ACCTCCTCCATCTCCACCACCCCCATCAAT-ATCTAGCACCCC
3431 ACCTCCTCCATCTCCACCACCCCCATCAATATCTAGCACCCC
1 ACCTCCTCCATCTCCACCACCCCCATCAATATCTAGCACCCC
*
3473 ACCTTCTCC
1 ACCTCCTCC
3482 CCCATCTATG
Statistics
Matches: 72, Mismatches: 13, Indels: 10
0.76 0.14 0.11
Matches are distributed among these distances:
39 29 0.40
40 3 0.04
41 3 0.04
42 37 0.51
ACGTcount: A:0.22, C:0.52, G:0.05, T:0.22
Consensus pattern (42 bp):
ACCTCCTCCATCTCCACCACCCCCATCAATATCTAGCACCCC
Found at i:3460 original size:81 final size:81
Alignment explanation
Indices: 3320--3476 Score: 260
Period size: 81 Copynumber: 1.9 Consensus size: 81
3310 CTTGTTCTTC
* * * *
3320 TTCACCAACCACTTTGACAACTAGTGCCCTACCTCCTCCATCTCCACCACCCCCGTCAATATCTA
1 TTCACCAACCACTTCGACAACTAGTACCCCACCTCCTCCATCTCCACCACCCCCATCAATATCTA
3385 GCACCCCACCTCCTCT
66 GCACCCCACCTCCTCT
**
3401 TTCACCAACCACTTCGATGACTAGTACCCCACCTCCTCCATCTCCACCACCCCCATCAATATCTA
1 TTCACCAACCACTTCGACAACTAGTACCCCACCTCCTCCATCTCCACCACCCCCATCAATATCTA
3466 GCACCCCACCT
66 GCACCCCACCT
3477 TCTCCCCCAT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.24, C:0.48, G:0.06, T:0.22
Consensus pattern (81 bp):
TTCACCAACCACTTCGACAACTAGTACCCCACCTCCTCCATCTCCACCACCCCCATCAATATCTA
GCACCCCACCTCCTCT
Found at i:3638 original size:39 final size:39
Alignment explanation
Indices: 3594--3726 Score: 124
Period size: 39 Copynumber: 3.3 Consensus size: 39
3584 ATATCTAGCA
*
3594 CCCCACCTCCTCCTTCAACAACCACTTTGACGACTAGTG
1 CCCCACCTCCTCCTTCAACAACCACTTTGACAACTAGTG
* * * * ** * **
3633 CCCCACCTTCTCCATCTCCACCACCCCCATCA-ATATCTAGCA
1 CCCCACCTCCTCC-T-TCAACAACCACTTTGACA-A-CTAGTG
3675 CCCCACCTCCTCCTTCAACAACCACTTTGACAACTAGTG
1 CCCCACCTCCTCCTTCAACAACCACTTTGACAACTAGTG
*
3714 CCCCACCTTCTCC
1 CCCCACCTCCTCC
3727 ATCTCCACCA
Statistics
Matches: 69, Mismatches: 20, Indels: 10
0.70 0.20 0.10
Matches are distributed among these distances:
39 28 0.41
40 12 0.17
41 13 0.19
42 16 0.23
ACGTcount: A:0.23, C:0.49, G:0.06, T:0.23
Consensus pattern (39 bp):
CCCCACCTCCTCCTTCAACAACCACTTTGACAACTAGTG
Found at i:3681 original size:81 final size:81
Alignment explanation
Indices: 3555--3767 Score: 378
Period size: 81 Copynumber: 2.7 Consensus size: 81
3545 GCTACCTCCT
3555 CCACCTTCTCCATCTCCACCA-CCCCATCAATATCTAGCACCCCACCTCCTCCTTCAACAACCAC
1 CCACCTTCTCCATCTCCACCACCCCCATCAATATCTAGCACCCCACCTCCTCCTTCAACAACCAC
*
3619 TTTGACGACTAGTGCC
66 TTTGACAACTAGTGCC
3635 CCACCTTCTCCATCTCCACCACCCCCATCAATATCTAGCACCCCACCTCCTCCTTCAACAACCAC
1 CCACCTTCTCCATCTCCACCACCCCCATCAATATCTAGCACCCCACCTCCTCCTTCAACAACCAC
3700 TTTGACAACTAGTGCC
66 TTTGACAACTAGTGCC
*
3716 CCACCTTCTCCATCTCCACCACCCCCATCAACT-TCTAACA-CCCACCTCCTCC
1 CCACCTTCTCCATCTCCACCACCCCCATCAA-TATCTAGCACCCCACCTCCTCC
3768 CCATCGATGT
Statistics
Matches: 129, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
80 33 0.26
81 95 0.74
82 1 0.01
ACGTcount: A:0.23, C:0.50, G:0.04, T:0.22
Consensus pattern (81 bp):
CCACCTTCTCCATCTCCACCACCCCCATCAATATCTAGCACCCCACCTCCTCCTTCAACAACCAC
TTTGACAACTAGTGCC
Found at i:3748 original size:39 final size:39
Alignment explanation
Indices: 3626--3748 Score: 115
Period size: 39 Copynumber: 3.1 Consensus size: 39
3616 CACTTTGACG
3626 ACTAGTGCCCCACCTTCTCCATCTCCACCACCCCCATCAA
1 ACTAGTGCCCCACCTTCTCCATCTCCACCACCCCCATC-A
** * * * * **
3666 TATCTAGCACCCCACCTCCTCC-T-TCAACAACCACTTTGACA
1 -A-CTAGTGCCCCACCTTCTCCATCTCCACCACCCCCAT--CA
3707 ACTAGTGCCCCACCTTCTCCATCTCCACCACCCCCATCA
1 ACTAGTGCCCCACCTTCTCCATCTCCACCACCCCCATCA
3746 ACT
1 ACT
3749 TCTAACACCC
Statistics
Matches: 61, Mismatches: 16, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
39 21 0.34
40 11 0.18
41 12 0.20
42 17 0.28
ACGTcount: A:0.24, C:0.50, G:0.05, T:0.22
Consensus pattern (39 bp):
ACTAGTGCCCCACCTTCTCCATCTCCACCACCCCCATCA
Found at i:4352 original size:36 final size:33
Alignment explanation
Indices: 4198--4330 Score: 212
Period size: 33 Copynumber: 4.0 Consensus size: 33
4188 GGAGTTGGAC
* * * * *
4198 CACCACCGCCACCACTACCTCCAGGGGGAGGAG
1 CACCACCTCCGCCACCACCTCCTGGAGGAGGAG
4231 CACCACCTCCGCCACCACCTCCTGGAGGAGGAG
1 CACCACCTCCGCCACCACCTCCTGGAGGAGGAG
*
4264 CACCACCTCCGCCACCACCTCCTGGTGGAGGAG
1 CACCACCTCCGCCACCACCTCCTGGAGGAGGAG
4297 CACCACCTCCGCCACCACCTCCTGGAGGAGGAG
1 CACCACCTCCGCCACCACCTCCTGGAGGAGGAG
4330 C
1 C
4331 TCCTGGCCCT
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 93 1.00
ACGTcount: A:0.21, C:0.45, G:0.25, T:0.09
Consensus pattern (33 bp):
CACCACCTCCGCCACCACCTCCTGGAGGAGGAG
Done.