Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03424.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3618
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30


Found at i:891 original size:6 final size:6

Alignment explanation


    Indices: 869--915  Score: 67
    Period size: 6  Copynumber: 7.8  Consensus size: 6

        859 GTGGGTGTTG

                 *    *          *                                
        869 CTGGTG CTGTTC CTGGTC TTGGTC CTGGTC CTGGTC CTGGTC CTGGT
          1 CTGGTC CTGGTC CTGGTC CTGGTC CTGGTC CTGGTC CTGGTC CTGGT

        916 GTTGGTGCAA


Statistics
Matches: 36,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   6   36  1.00

ACGTcount: A:0.00, C:0.28, G:0.34, T:0.38


Consensus pattern (6 bp):   
CTGGTC

Found at i:2187 original size:18 final size:18

Alignment explanation


    Indices: 2146--2189  Score: 52
    Period size: 18  Copynumber: 2.4  Consensus size: 18

       2136 CGCAACCGTG

                      *      *
       2146 ATAGGGAACGTGATCGAG
          1 ATAGGGAACGGGATCGAC

             *     *          
       2164 ACAGGGATCGGGATCGAC
          1 ATAGGGAACGGGATCGAC

                    
       2182 ATAGGGAA
          1 ATAGGGAA

       2190 GACAAAGACA


Statistics
Matches: 20,  Mismatches: 6, Indels: 0
        0.77            0.23        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.34, C:0.14, G:0.39, T:0.14


Consensus pattern (18 bp):   
ATAGGGAACGGGATCGAC
Done.