Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03433.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1867
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29


Found at i:1220 original size:60 final size:60

Alignment explanation


    Indices: 995--1253  Score: 244
    Period size: 60  Copynumber: 4.3  Consensus size: 60

        985 CCTCGGGCTG

                                                                       *   
        995 TACATTACAGTATAGCAGCACCAGCACCTTTGGCTACTCCTCAACAGGAGCAACCTCAGGCCA
          1 TACATTACAGTAT---AGCACCAGCACCTTTGGCTACTCCTCAACAGGAGCAACCTCAGACCA

                       *     * * *         *    *                   **    
       1058 TACATTACAGTGTAGCATCGGGA-CTTT--CCA-TGACTCAACCA-GAGCAACCTCTTACCA
          1 TACATTACAGTATAGCACCAGCACCTTTGGCTACT-CCTCAA-CAGGAGCAACCTCAGACCA

                                                                       *   
       1115 TACA-TACAGTATAGCGGCACCAGCACCTTTGGCTACTCCTCAACAGGAGCAACCTCAGGCCA
          1 TACATTACAGTATA---GCACCAGCACCTTTGGCTACTCCTCAACAGGAGCAACCTCAGACCA

                       *         *          *                 *    **    
       1177 TACATTACAGTGTAGCACCAGGACCTTCT-GCAACTCCTCAACAGGAGCAGCCTCTTACCA
          1 TACATTACAGTATAGCACCAGCACCTT-TGGCTACTCCTCAACAGGAGCAACCTCAGACCA

                             
       1237 TACATTACAGTATAGCA
          1 TACATTACAGTATAGCA

       1254 GCACCGGGAC


Statistics
Matches: 158,  Mismatches: 26, Indels: 27
        0.75            0.12        0.13

Matches are distributed among these distances:
  56    9  0.06
  57   24  0.15
  58    2  0.01
  59   10  0.06
  60   65  0.41
  61    3  0.02
  62   24  0.15
  63   21  0.13

ACGTcount: A:0.30, C:0.32, G:0.17, T:0.21


Consensus pattern (60 bp):   
TACATTACAGTATAGCACCAGCACCTTTGGCTACTCCTCAACAGGAGCAACCTCAGACCA
Done.