Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03462.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 580

Length: 968
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.33


Found at i:25 original size:1 final size:1

Alignment explanation


    Indices: 19--67  Score: 53
    Period size: 1  Copynumber: 49.0  Consensus size: 1

          9 AACCACACAC

                                  *   *     *     *     *    
         19 AAAAAAAAAAAAAAAAAAAAAAGAAAGAAAAAGAAAAAGAAAAAGAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

         68 CAAATAACGG


Statistics
Matches: 38,  Mismatches: 10, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
   1   38  1.00

ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00


Consensus pattern (1 bp):   
A

Found at i:55 original size:22 final size:22

Alignment explanation


    Indices: 24--66  Score: 68
    Period size: 22  Copynumber: 2.0  Consensus size: 22

         14 CACACAAAAA

                                  
         24 AAAAAAAAAAAAAAAAAGAAAG
          1 AAAAAAAAAAAAAAAAAGAAAG

                 *     *         
         46 AAAAAGAAAAAGAAAAAGAAA
          1 AAAAAAAAAAAAAAAAAGAAA

         67 ACAAATAACG


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  22   19  1.00

ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00


Consensus pattern (22 bp):   
AAAAAAAAAAAAAAAAAGAAAG
Done.