Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga02g00467.P1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 890
Length: 1484
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.40
Found at i:1201 original size:287 final size:278
Alignment explanation
Indices: 494--1183 Score: 1071
Period size: 277 Copynumber: 2.5 Consensus size: 278
484 ATAAAAGTCG
*
494 ATGATGATAAGTTGTAAGGCTTGTTTCTCAAAACATTCGCAGTGGCCGTCTAAGAGCTTTCGCCT
1 ATGATGATAAGTTGTAAGGCTTGTTTCTCAAAACATTCGCAGTGGCCGCCTAAGAGCTTTCGCCT
559 TTCGCCGGGCTTGAGAGCTTGTGCTGCTTCATTCCTTCCTTGGATGTCTGAGACCTTTTATGACT
66 TTCGCCGGGCTTGAGAGCTTGTGCTGCTTCATTCCTTCCTTGGATGTCTGAGACCTTTTATGACT
* * * * *** *
624 TCTATATGATTGTTGTTTTCATTATTTGTGCTTGAAAATTCAGTTATTTTTTCAGAAATTTGGTT
131 TCTATATAATTGTTGTTTTCATTATTTGTGCTTGAAAATCCAATTACTTCCACAGAAATCTGGTT
689 CCATATTTTTTTTATCAGTTCAATTGATAAACGATATTCTTAAAATTCAGTCAAAGGAAAATATA
196 CCATATTTTTTTTATCAGTTCAATTGATAAACGATATTCTTAAAATTCAGTCAAAGGAAAATATA
754 TTTCTTGTGTATGGGTTT
261 TTTCTTGTGTATGGGTTT
*** *
772 ATGATGATAA-TCCAAAGGCTTGTTTCTCAAAACATTCGCAGTGGCCGCCTAAGAGCTTTCGCTT
1 ATGATGATAAGTTGTAAGGCTTGTTTCTCAAAACATTCGCAGTGGCCGCCTAAGAGCTTTCGCCT
*
836 TTCGCCGGGCTTGAGAGCTTGTGCTGCTTCATTCCTTCCTTGGATGTCTGAGACCTTCTATGACT
66 TTCGCCGGGCTTGAGAGCTTGTGCTGCTTCATTCCTTCCTTGGATGTCTGAGACCTTTTATGACT
*
901 TGTATATAATTGTTGGTTTTCATTATTTGTGCTTGAAAATCCAATTACTTCCACAGAAATCTGGT
131 TCTATATAATTGTT-GTTTTCATTATTTGTGCTTGAAAATCCAATTACTTCCACAGAAATCTGGT
** **
966 TGTATATTTTTTCCTTTTTTTTATCAGTTCAATTGATAAACGATATTCTTAAAATTGTGTCAAAG
195 TCCATA--------TTTTTTTTATCAGTTCAATTGATAAACGATATTCTTAAAATTCAGTCAAAG
*
1031 GATAATATATTTCATT-TGTATGGGTTT
252 GAAAATATATTTC-TTGTGTATGGGTTT
1058 ATGATGATAAGTTGTAAGGCTTGTTTCTCAAAACATTCGCAGTGGCCGCCTAAGAGCTTTCGCCT
1 ATGATGATAAGTTGTAAGGCTTGTTTCTCAAAACATTCGCAGTGGCCGCCTAAGAGCTTTCGCCT
*
1123 TTCGCCGGGCTTGAGAGCTTGTGCTGCTT-TTATCCTTCCTTGGATGTCTGAGACCTTTTAT
66 TTCGCCGGGCTTGAGAGCTTGTGCTGCTTCAT-TCCTTCCTTGGATGTCTGAGACCTTTTAT
1184 TATATTTTTA
Statistics
Matches: 374, Mismatches: 26, Indels: 15
0.90 0.06 0.04
Matches are distributed among these distances:
277 125 0.33
278 57 0.15
286 83 0.22
287 109 0.29
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.40
Consensus pattern (278 bp):
ATGATGATAAGTTGTAAGGCTTGTTTCTCAAAACATTCGCAGTGGCCGCCTAAGAGCTTTCGCCT
TTCGCCGGGCTTGAGAGCTTGTGCTGCTTCATTCCTTCCTTGGATGTCTGAGACCTTTTATGACT
TCTATATAATTGTTGTTTTCATTATTTGTGCTTGAAAATCCAATTACTTCCACAGAAATCTGGTT
CCATATTTTTTTTATCAGTTCAATTGATAAACGATATTCTTAAAATTCAGTCAAAGGAAAATATA
TTTCTTGTGTATGGGTTT
Done.