Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03497.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2393
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26


Found at i:57 original size:11 final size:10

Alignment explanation


    Indices: 37--61  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

         27 AAACACACAC

                      
         37 AAAAATAAAA
          1 AAAAATAAAA

                      
         47 AAAAATAAAA
          1 AAAAATAAAA

                 
         57 AAAAA
          1 AAAAA

         62 CATGGCCTTA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08


Consensus pattern (10 bp):   
AAAAATAAAA
Done.