Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03500.N8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1825
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32


Found at i:484 original size:47 final size:46

Alignment explanation


    Indices: 430--606  Score: 218
    Period size: 47  Copynumber: 3.8  Consensus size: 46

        420 TGGTTGAGCA

                                                           
        430 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGGAATG
          1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGT-GAATG

                                           *   *             
        477 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGTA-AGATGT-AACTAGG
          1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G

                                                      *   * 
        522 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
          1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG

            *    *                               
        570 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
          1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG

        607 GCGGGTTACA


Statistics
Matches: 113,  Mismatches: 8, Indels: 19
        0.81            0.06        0.14

Matches are distributed among these distances:
  42    2  0.02
  43    1  0.01
  44    5  0.04
  45    4  0.04
  46   35  0.31
  47   56  0.50
  48    1  0.01
  49    3  0.03
  50    4  0.04
  51    2  0.02

ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29


Consensus pattern (46 bp):   
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Done.