Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03504.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3502
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32


Found at i:2933 original size:34 final size:34

Alignment explanation


    Indices: 2890--2967  Score: 147
    Period size: 34  Copynumber: 2.3  Consensus size: 34

       2880 TCAGACGAGT

                *                             
       2890 TAGTCCTACTATTGCAAGTAACTGATGATTACCA
          1 TAGTTCTACTATTGCAAGTAACTGATGATTACCA

                                              
       2924 TAGTTCTACTATTGCAAGTAACTGATGATTACCA
          1 TAGTTCTACTATTGCAAGTAACTGATGATTACCA

                      
       2958 TAGTTCTACT
          1 TAGTTCTACT

       2968 GCAGTAGGTT


Statistics
Matches: 43,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  34   43  1.00

ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36


Consensus pattern (34 bp):   
TAGTTCTACTATTGCAAGTAACTGATGATTACCA
Done.