Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03520.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3107
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:1358 original size:47 final size:47

Alignment explanation


    Indices: 1297--1493  Score: 349
    Period size: 47  Copynumber: 4.2  Consensus size: 47

       1287 TTTTATCATG

                     *           *        *                
       1297 AGAGTCCTACCTAACTTCTCCAAAAAATAAAAAAAAAACTTTTATTA
          1 AGAGTCCTATCTAACTTCTCCTAAAAATAATAAAAAAACTTTTATTA

                                                           
       1344 AGAGTCCTATCTAACTTCTCCTAAAAATAATAAAAAAACTTTTATTA
          1 AGAGTCCTATCTAACTTCTCCTAAAAATAATAAAAAAACTTTTATTA

                                               *           
       1391 AGAGTCCTATCTAACTTCTCCTAAAAATAATAAAACAACTTTTATTA
          1 AGAGTCCTATCTAACTTCTCCTAAAAATAATAAAAAAACTTTTATTA

                                               *           
       1438 AGAGTCCTATCTAACTTCTCCTAAAAATAATAAAACAACTTTTATTA
          1 AGAGTCCTATCTAACTTCTCCTAAAAATAATAAAAAAACTTTTATTA

                     
       1485 AGAGTCCTA
          1 AGAGTCCTA

       1494 CATCTACAAC


Statistics
Matches: 146,  Mismatches: 4, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  47  146  1.00

ACGTcount: A:0.44, C:0.19, G:0.05, T:0.32


Consensus pattern (47 bp):   
AGAGTCCTATCTAACTTCTCCTAAAAATAATAAAAAAACTTTTATTA

Done.