Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03538.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 485

Length: 809
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.35


Found at i:211 original size:6 final size:6

Alignment explanation


    Indices: 165--209  Score: 58
    Period size: 6  Copynumber: 7.7  Consensus size: 6

        155 CTTGCTATTC

                                                           *      
        165 ACCC-A ACCCTAA A-CCAA ACCCAA ACCCAA ACCCAA ACCCCA ACCC
          1 ACCCAA ACCC-AA ACCCAA ACCCAA ACCCAA ACCCAA ACCCAA ACCC

        210 CACCCCCACT


Statistics
Matches: 36,  Mismatches: 1, Indels: 5
        0.86            0.02        0.12

Matches are distributed among these distances:
   5    7  0.19
   6   27  0.75
   7    2  0.06

ACGTcount: A:0.44, C:0.53, G:0.00, T:0.02


Consensus pattern (6 bp):   
ACCCAA
Done.