Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03540.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2542
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:1337 original size:4 final size:4

Alignment explanation


    Indices: 1328--1404  Score: 154
    Period size: 4  Copynumber: 19.2  Consensus size: 4

       1318 CCTGTTGCCG

                                                                       
       1328 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
          1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA

                                                
       1376 TACA TACA TACA TACA TACA TACA TACA T
          1 TACA TACA TACA TACA TACA TACA TACA T

       1405 GTTTCCTTTG


Statistics
Matches: 73,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   73  1.00

ACGTcount: A:0.49, C:0.25, G:0.00, T:0.26


Consensus pattern (4 bp):   
TACA

Found at i:1612 original size:26 final size:26

Alignment explanation


    Indices: 1576--1627  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1566 TTTATGGGAA

                                      
       1576 ATGCACCCTTAAACCTTCTTGATGTT
          1 ATGCACCCTTAAACCTTCTTGATGTT

                                      
       1602 ATGCACCCTTAAACCTTCTTGATGTT
          1 ATGCACCCTTAAACCTTCTTGATGTT

       1628 CCTTTTCAGA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.23, C:0.27, G:0.12, T:0.38


Consensus pattern (26 bp):   
ATGCACCCTTAAACCTTCTTGATGTT
Done.