Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03548.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2234
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28


Found at i:1539 original size:18 final size:18

Alignment explanation


    Indices: 1516--1553  Score: 67
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1506 CTCTCCGTTA

                              
       1516 TGGCGGCGGTGGTGATGG
          1 TGGCGGCGGTGGTGATGG

                       *      
       1534 TGGCGGCGGTGTTGATGG
          1 TGGCGGCGGTGGTGATGG

              
       1552 TG
          1 TG

       1554 ATAGTGGTGG


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.05, C:0.11, G:0.58, T:0.26


Consensus pattern (18 bp):   
TGGCGGCGGTGGTGATGG

Found at i:1561 original size:27 final size:27

Alignment explanation


    Indices: 1531--1582  Score: 68
    Period size: 27  Copynumber: 1.9  Consensus size: 27

       1521 GCGGTGGTGA

                          *     *      
       1531 TGGTGGCGGCGGTGTTGATGGTGATAG
          1 TGGTGGCGGCGGTGCTGATGCTGATAG

                  *  *               
       1558 TGGTGGTGGTGGTGCTGATGCTGAT
          1 TGGTGGCGGCGGTGCTGATGCTGAT

       1583 GCTGATCGTC


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  27   21  1.00

ACGTcount: A:0.10, C:0.08, G:0.50, T:0.33


Consensus pattern (27 bp):   
TGGTGGCGGCGGTGCTGATGCTGATAG
Done.