Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03552.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 748

Length: 1248
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.24


Found at i:308 original size:9 final size:9

Alignment explanation


    Indices: 294--372  Score: 56
    Period size: 9  Copynumber: 8.8  Consensus size: 9

        284 CTTGCCATGG

                     
        294 AAAGAAGGA
          1 AAAGAAGGA

                     
        303 AAAGAA-G-
          1 AAAGAAGGA

              *   *  
        310 -ATGAAAGA
          1 AAAGAAGGA

            *        
        318 CAAGAAGGA
          1 AAAGAAGGA

                        
        327 GAAAGACAAGGA
          1 -AAAG--AAGGA

            * *      
        339 CAGGAAGGA
          1 AAAGAAGGA

                  *  
        348 AAAGAAAGA
          1 AAAGAAGGA

                     
        357 AAAGAAGGA
          1 AAAGAAGGA

                   
        366 AAAGAAG
          1 AAAGAAG

        373 ACCGAGAGCA


Statistics
Matches: 54,  Mismatches: 10, Indels: 12
        0.71            0.13        0.16

Matches are distributed among these distances:
   6    4  0.07
   7    1  0.02
   8    1  0.02
   9   38  0.70
  10    3  0.06
  11    2  0.04
  12    5  0.09

ACGTcount: A:0.63, C:0.04, G:0.32, T:0.01


Consensus pattern (9 bp):   
AAAGAAGGA
Done.