Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03563.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 442

Length: 737
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32


Found at i:723 original size:20 final size:20

Alignment explanation


    Indices: 698--737  Score: 71
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        688 TTACATCACA

                                
        698 AGTAATTCATAATTTAGACC
          1 AGTAATTCATAATTTAGACC

                       *        
        718 AGTAATTCATATTTTAGACC
          1 AGTAATTCATAATTTAGACC


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   19  1.00

ACGTcount: A:0.38, C:0.15, G:0.10, T:0.38


Consensus pattern (20 bp):   
AGTAATTCATAATTTAGACC
Done.