Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03583.N7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2026
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30


Found at i:1963 original size:106 final size:106

Alignment explanation


    Indices: 1801--2026  Score: 346
    Period size: 106  Copynumber: 2.1  Consensus size: 106

       1791 ATCTATTCGT

                      **                   *   *    *                    *   
       1801 GACCTTTATATTCCTCACATATTTATCCTATTAAATTTGAGAAATTATATAAGCCTTTTTCTATG
          1 GACCTTTATACACCTCACATATTTATCCTATGAAACTTGAAAAATTATATAAGCCTTTTTCAATG

             *                                       
       1866 ATTTAATTGAGAATGATATGGACTATACATGATCTACATGC
         66 ACTTAATTGAGAATGATATGGACTATACATGATCTACATGC

                                                                             
       1907 GACCTTTATACACCTCACATATTTAT-CTCATGAAACTTGAAAAATTATATAAGCCTTTTTCAAT
          1 GACCTTTATACACCTCACATATTTATCCT-ATGAAACTTGAAAAATTATATAAGCCTTTTTCAAT

                                  **   *              
       1971 GACTTAATTGAGAATGATATGGGTTATGCATGATCTACATGC
         65 GACTTAATTGAGAATGATATGGACTATACATGATCTACATGC

                          
       2013 GACCTTTATACACC
          1 GACCTTTATACACC


Statistics
Matches: 109,  Mismatches: 10, Indels: 2
        0.90            0.08        0.02

Matches are distributed among these distances:
 105    2  0.02
 106  107  0.98

ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38


Consensus pattern (106 bp):   
GACCTTTATACACCTCACATATTTATCCTATGAAACTTGAAAAATTATATAAGCCTTTTTCAATG
ACTTAATTGAGAATGATATGGACTATACATGATCTACATGC
Done.