Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03595.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 383

Length: 639
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28


Found at i:591 original size:29 final size:29

Alignment explanation


    Indices: 558--617  Score: 111
    Period size: 29  Copynumber: 2.1  Consensus size: 29

        548 TAGTTTGGTC

                                         
        558 ATTATATTTTTAGAGATTACGAATTCGAA
          1 ATTATATTTTTAGAGATTACGAATTCGAA

                                     *   
        587 ATTATATTTTTAGAGATTACGAATTTGAA
          1 ATTATATTTTTAGAGATTACGAATTCGAA

              
        616 AT
          1 AT

        618 AAATTTAAAT


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   30  1.00

ACGTcount: A:0.38, C:0.05, G:0.13, T:0.43


Consensus pattern (29 bp):   
ATTATATTTTTAGAGATTACGAATTCGAA
Done.