Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00489.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 767

Length: 1279
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33


Found at i:1076 original size:66 final size:66

Alignment explanation


    Indices: 954--1083  Score: 179
    Period size: 66  Copynumber: 2.0  Consensus size: 66

        944 TCTGTGTACG

                            *         *         *        *                   
        954 TCAAATAACTAGGATGTTATGATCGAGATGAATCAAGTGCTCCTAGCTAAACGTGTTATGAATGG
          1 TCAAATAACTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAACGTGTTATGAATGG

             
       1019 A
         66 A

                                   *                  *   *  * *            
       1020 TCAAATAACTAGGATGCTATGATTGAAATGAATCAAATGCTCTTAATTAGATGTGTTATGAATG
          1 TCAAATAACTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAACGTGTTATGAATG

       1084 ATGTATGAAT


Statistics
Matches: 55,  Mismatches: 9, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  66   55  1.00

ACGTcount: A:0.36, C:0.12, G:0.21, T:0.32


Consensus pattern (66 bp):   
TCAAATAACTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAACGTGTTATGAATGG
A
Done.