Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03601.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2084
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30


Found at i:54 original size:33 final size:33

Alignment explanation


    Indices: 12--77  Score: 132
    Period size: 33  Copynumber: 2.0  Consensus size: 33

          2 CAGACATCTA

                                             
         12 TCACCTACTTTCACTACTATCAGAGAGACCTCC
          1 TCACCTACTTTCACTACTATCAGAGAGACCTCC

                                             
         45 TCACCTACTTTCACTACTATCAGAGAGACCTCC
          1 TCACCTACTTTCACTACTATCAGAGAGACCTCC

         78 AATGGCTGCT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   33  1.00

ACGTcount: A:0.27, C:0.36, G:0.09, T:0.27


Consensus pattern (33 bp):   
TCACCTACTTTCACTACTATCAGAGAGACCTCC
Done.