Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03602.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2508
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25


Found at i:1651 original size:21 final size:21

Alignment explanation


    Indices: 1625--1665  Score: 82
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1615 GCTAAGAATC

                                 
       1625 GGGATATTTTGAACCTATATT
          1 GGGATATTTTGAACCTATATT

                                
       1646 GGGATATTTTGAACCTATAT
          1 GGGATATTTTGAACCTATAT

       1666 AACGAAGGAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41


Consensus pattern (21 bp):   
GGGATATTTTGAACCTATATT
Done.