Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03604.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3271
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:2462 original size:22 final size:20

Alignment explanation


    Indices: 2434--2474  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 20

       2424 CAAATATAAA

                        *         
       2434 TTCATCTCATCTTGTATGTGGC
          1 TTCATCT-ATCTGGTA-GTGGC

                               
       2456 TTCATCTATCTGGTAGTGG
          1 TTCATCTATCTGGTAGTGG

       2475 AACATGTTAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  20    4  0.22
  21    7  0.39
  22    7  0.39

ACGTcount: A:0.15, C:0.20, G:0.22, T:0.44


Consensus pattern (20 bp):   
TTCATCTATCTGGTAGTGGC
Done.