Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03605.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2448
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28


Found at i:239 original size:3 final size:3

Alignment explanation


    Indices: 231--256  Score: 52
    Period size: 3  Copynumber: 8.7  Consensus size: 3

        221 GCGGAAGCTA

                                              
        231 GCG GCG GCG GCG GCG GCG GCG GCG GC
          1 GCG GCG GCG GCG GCG GCG GCG GCG GC

        257 TTCTGGTCTT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   23  1.00

ACGTcount: A:0.00, C:0.35, G:0.65, T:0.00


Consensus pattern (3 bp):   
GCG

Found at i:920 original size:150 final size:150

Alignment explanation


    Indices: 649--1101  Score: 834
    Period size: 150  Copynumber: 3.0  Consensus size: 150

        639 TTAAACGTAT

                          *                      *                           
        649 TGAGAATAGCTCTACGGTTAAGGAAACTGCTGGAAACGACTGCAATGAAGACAGTGAGGATTTAA
          1 TGAGAATAGCTCTAAGGTTAAGGAAACTGCTGGAAACAACTGCAATGAAGACAGTGAGGATTTAA

                                                        *   *                
        714 GTCAAGTTGTTGATTCTTCAGGCTTAGAGGATGTGGTTAGTGGTCGAACGTCAACTGAGGGAGAA
         66 GTCAAGTTGTTGATTCTTCAGGCTTAGAGGATGTGGTTAGTGGTAGAAGGTCAACTGAGGGAGAA

                                
        779 AGTCCCATGGTTGATGATTC
        131 AGTCCCATGGTTGATGATTC

                                                                             
        799 TGAGAATAGCTCTAAGGTTAAGGAAACTGCTGGAAACAACTGCAATGAAGACAGTGAGGATTTAA
          1 TGAGAATAGCTCTAAGGTTAAGGAAACTGCTGGAAACAACTGCAATGAAGACAGTGAGGATTTAA

                                                                     *       
        864 GTCAAGTTGTTGATTCTTCAGGCTTAGAGGATGTGGTTAGTGGTAGAAGGTCAACTGTGGGAGAA
         66 GTCAAGTTGTTGATTCTTCAGGCTTAGAGGATGTGGTTAGTGGTAGAAGGTCAACTGAGGGAGAA

                                
        929 AGTCCCATGGTTGATGATTC
        131 AGTCCCATGGTTGATGATTC

                                                                             
        949 TGAGAATAGCTCTAAGGTTAAGGAAACTGCTGGAAACAACTGCAATGAAGACAGTGAGGATTTAA
          1 TGAGAATAGCTCTAAGGTTAAGGAAACTGCTGGAAACAACTGCAATGAAGACAGTGAGGATTTAA

                                               *      *                      
       1014 GTCAAGTTGTTGATTCTTCAGGCTTAGAGGATGTGATTAGTGATAGAAGGTCAACTGAGGGAGAA
         66 GTCAAGTTGTTGATTCTTCAGGCTTAGAGGATGTGGTTAGTGGTAGAAGGTCAACTGAGGGAGAA

                           *    
       1079 AGTCCCATGGTTGATTATTC
        131 AGTCCCATGGTTGATGATTC

               
       1099 TGA
          1 TGA

       1102 TCGCCCTCCG


Statistics
Matches: 294,  Mismatches: 9, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 150  294  1.00

ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27


Consensus pattern (150 bp):   
TGAGAATAGCTCTAAGGTTAAGGAAACTGCTGGAAACAACTGCAATGAAGACAGTGAGGATTTAA
GTCAAGTTGTTGATTCTTCAGGCTTAGAGGATGTGGTTAGTGGTAGAAGGTCAACTGAGGGAGAA
AGTCCCATGGTTGATGATTC
Done.