Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03614.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 999

Length: 1666
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30


Found at i:1584 original size:15 final size:16

Alignment explanation


    Indices: 1552--1584  Score: 50
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1542 ATAATGATTC

                         *  
       1552 TTAATTTTTATTACAT
          1 TTAATTTTTATTAAAT

                            
       1568 TTAATTTTTA-TAAAT
          1 TTAATTTTTATTAAAT

              
       1583 TT
          1 TT

       1585 TTTCCTCTTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  15    6  0.38
  16   10  0.62

ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64


Consensus pattern (16 bp):   
TTAATTTTTATTAAAT
Done.