Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03621.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 836

Length: 1394
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32


Found at i:104 original size:6 final size:6

Alignment explanation


    Indices: 93--122  Score: 51
    Period size: 6  Copynumber: 5.0  Consensus size: 6

         83 GGCGAATGAA

                                   *          
         93 TCGGCG TCGGCG TCGGCG TCTGCG TCGGCG
          1 TCGGCG TCGGCG TCGGCG TCGGCG TCGGCG

        123 GATAAATTTG


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.00, C:0.33, G:0.47, T:0.20


Consensus pattern (6 bp):   
TCGGCG

Done.