Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03623.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3547
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30


Found at i:3021 original size:8 final size:9

Alignment explanation


    Indices: 3003--3030  Score: 56
    Period size: 9  Copynumber: 3.1  Consensus size: 9

       2993 CTTCCTCTGT

                     
       3003 AAACAAAAA
          1 AAACAAAAA

                     
       3012 AAACAAAAA
          1 AAACAAAAA

                     
       3021 AAACAAAAA
          1 AAACAAAAA

             
       3030 A
          1 A

       3031 TGTCAAAAAG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   19  1.00

ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00


Consensus pattern (9 bp):   
AAACAAAAA
Done.