Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03624.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 496

Length: 828
ACGTcount: A:0.21, C:0.20, G:0.18, T:0.41


Found at i:115 original size:31 final size:32

Alignment explanation


    Indices: 67--129  Score: 76
    Period size: 31  Copynumber: 2.0  Consensus size: 32

         57 AATTTCTCTT

                               **           
         67 CTTTTTTCTCTTTAATTTCGCTTTTTTTTTTC
          1 CTTTTTTCTCTTTAATTTCAATTTTTTTTTTC

                               *             
         99 CTTTTTT-T-TTTAAATTTTAATTTTTTTTTTC
          1 CTTTTTTCTCTTT-AATTTCAATTTTTTTTTTC

        130 AAATCTGAGT


Statistics
Matches: 27,  Mismatches: 3, Indels: 3
        0.82            0.09        0.09

Matches are distributed among these distances:
  30    3  0.11
  31   17  0.63
  32    7  0.26

ACGTcount: A:0.11, C:0.13, G:0.02, T:0.75


Consensus pattern (32 bp):   
CTTTTTTCTCTTTAATTTCAATTTTTTTTTTC
Done.