Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03647.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3992
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26


Found at i:1250 original size:18 final size:18

Alignment explanation


    Indices: 1197--1264  Score: 55
    Period size: 18  Copynumber: 3.8  Consensus size: 18

       1187 TCGTGACCAT

                       *  *  *
       1197 GATAGAGAGCGTGATCGT
          1 GATAGAGAGCGGGAGCGC

              *     *  *      
       1215 GACAGAGACCGTGAGCGC
          1 GATAGAGAGCGGGAGCGC

            *    *            
       1233 TATAGGGAGCGGGAGCGC
          1 GATAGAGAGCGGGAGCGC

               *          
       1251 GATCGAGAGCGGGA
          1 GATAGAGAGCGGGA

       1265 TATTGGACGC


Statistics
Matches: 38,  Mismatches: 12, Indels: 0
        0.76            0.24        0.00

Matches are distributed among these distances:
  18   38  1.00

ACGTcount: A:0.26, C:0.18, G:0.44, T:0.12


Consensus pattern (18 bp):   
GATAGAGAGCGGGAGCGC
Done.