Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03669.C2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2559
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29


Found at i:330 original size:24 final size:24

Alignment explanation


    Indices: 298--345  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        288 ATCAAAATCG

                                    
        298 GAGGATACAACTCGTGATTTTCAC
          1 GAGGATACAACTCGTGATTTTCAC

                                    
        322 GAGGATACAACTCGTGATTTTCAC
          1 GAGGATACAACTCGTGATTTTCAC

        346 AAAAAATCAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29


Consensus pattern (24 bp):   
GAGGATACAACTCGTGATTTTCAC
Done.