Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03669.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3244
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31


Found at i:330 original size:24 final size:24

Alignment explanation


    Indices: 298--345  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        288 ATCAAAATCG

                                    
        298 GAGGATACAACTCGTGATTTTCAC
          1 GAGGATACAACTCGTGATTTTCAC

                                    
        322 GAGGATACAACTCGTGATTTTCAC
          1 GAGGATACAACTCGTGATTTTCAC

        346 AAAAAATCAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29


Consensus pattern (24 bp):   
GAGGATACAACTCGTGATTTTCAC

Found at i:1362 original size:26 final size:26

Alignment explanation


    Indices: 1323--1378  Score: 85
    Period size: 26  Copynumber: 2.2  Consensus size: 26

       1313 ACTATACTAA

                     *                
       1323 TGAAAAGAATCAAATAAAGCCAAAAT
          1 TGAAAAGAACCAAATAAAGCCAAAAT

                             *      * 
       1349 TGAAAAGAACCAAATAAGGCCAAACT
          1 TGAAAAGAACCAAATAAAGCCAAAAT

                
       1375 TGAA
          1 TGAA

       1379 TAGATTTAGC


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.57, C:0.14, G:0.14, T:0.14


Consensus pattern (26 bp):   
TGAAAAGAACCAAATAAAGCCAAAAT
Done.