Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03669.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3031
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30


Found at i:238 original size:24 final size:24

Alignment explanation


    Indices: 206--253  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        196 ATCAAAATCG

                                    
        206 GAGGATACAACTCGTGATTTTCAC
          1 GAGGATACAACTCGTGATTTTCAC

                                    
        230 GAGGATACAACTCGTGATTTTCAC
          1 GAGGATACAACTCGTGATTTTCAC

        254 AAAAAATCAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29


Consensus pattern (24 bp):   
GAGGATACAACTCGTGATTTTCAC

Found at i:1149 original size:26 final size:26

Alignment explanation


    Indices: 1110--1165  Score: 85
    Period size: 26  Copynumber: 2.2  Consensus size: 26

       1100 ACTATACTAA

                     *                
       1110 TGAAAAGAATCAAATAAAGCCAAAAT
          1 TGAAAAGAACCAAATAAAGCCAAAAT

                             *      * 
       1136 TGAAAAGAACCAAATAAGGCCAAACT
          1 TGAAAAGAACCAAATAAAGCCAAAAT

                
       1162 TGAA
          1 TGAA

       1166 TAGATTTAGC


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.57, C:0.14, G:0.14, T:0.14


Consensus pattern (26 bp):   
TGAAAAGAACCAAATAAAGCCAAAAT
Done.