Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03678.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1986
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.34


Found at i:906 original size:32 final size:32

Alignment explanation


    Indices: 869--932  Score: 92
    Period size: 32  Copynumber: 2.0  Consensus size: 32

        859 GTTGCTTGCC

                                   *        
        869 TGCATTGCTTTTGGTTGATTTGCTTTCCTATT
          1 TGCATTGCTTTTGGTTGATTTGCCTTCCTATT

                   *         *   *          
        901 TGCATTGGTTTTGGTTGTTTTTCCTTCCTATT
          1 TGCATTGCTTTTGGTTGATTTGCCTTCCTATT

        933 GTATTCATAT


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  32   28  1.00

ACGTcount: A:0.08, C:0.16, G:0.19, T:0.58


Consensus pattern (32 bp):   
TGCATTGCTTTTGGTTGATTTGCCTTCCTATT

Found at i:1271 original size:218 final size:219

Alignment explanation


    Indices: 882--1311  Score: 736
    Period size: 218  Copynumber: 2.0  Consensus size: 219

        872 ATTGCTTTTG

                      *                                *       *   *    *    
        882 GTTGATTTGCTTTCCTATTTGCATTGGTTTTGGTTGTTTTTCCTTCCTATTGTATTCATATGATG
          1 GTTGATTTGCCTTCCTATTTGCATTGGTTTTGGTTGTTTTTCCCTCCTATTATATGCATACGATG

                                       *                                     
        947 AACTCTACTCGGATTCCCCTTCAAGACTTCATGGGTGATGCTAACTCGAGTTTCTGATGCAAACA
         66 AACTCTACTCGGATTCCCCTTCAAGACATCATGGGTGATGCTAACTCGAGTTTCTGATGCAAACA

                                            *         *        *             
       1012 TTAAGTGATCAATTTTACATAGTTCACAAATTTGATTTGTATTAAAGTAT-GAAAAATGTGTTTC
        131 TTAAGTGATCAATTTTACATAGTTCACAAATTCGATTTGTATGAAAGTATAAAAAAATGTGTTTC

                                    
       1076 TTCATTCTTTCTTCAATTCAGTTT
        196 TTCATTCTTTCTTCAATTCAGTTT

                                                                             
       1100 GTTGATTTGCCTTCCTATTTGCATTGGTTTTGGTTGTTTTTCCCTCCTATTATATGCATACGATG
          1 GTTGATTTGCCTTCCTATTTGCATTGGTTTTGGTTGTTTTTCCCTCCTATTATATGCATACGATG

                                                                          *  
       1165 AACTCTACTCGGATTCCCCTTCAAGACATCATGGGTGATGCTAACTCGAGTTTCTGATGCAAGCA
         66 AACTCTACTCGGATTCCCCTTCAAGACATCATGGGTGATGCTAACTCGAGTTTCTGATGCAAACA

                                         *    *        *                     
       1230 TTAAGTGATCAATTTTACATAGTTCACAACTTCGGTTTGTATGGAAGTATAAAAAAATGTGTTTC
        131 TTAAGTGATCAATTTTACATAGTTCACAAATTCGATTTGTATGAAAGTATAAAAAAATGTGTTTC

                             
       1295 TTCATTCTTTCTTCAAT
        196 TTCATTCTTTCTTCAAT

       1312 ACTCTAATAA


Statistics
Matches: 198,  Mismatches: 13, Indels: 1
        0.93            0.06        0.00

Matches are distributed among these distances:
 218  168  0.85
 219   30  0.15

ACGTcount: A:0.24, C:0.18, G:0.16, T:0.42


Consensus pattern (219 bp):   
GTTGATTTGCCTTCCTATTTGCATTGGTTTTGGTTGTTTTTCCCTCCTATTATATGCATACGATG
AACTCTACTCGGATTCCCCTTCAAGACATCATGGGTGATGCTAACTCGAGTTTCTGATGCAAACA
TTAAGTGATCAATTTTACATAGTTCACAAATTCGATTTGTATGAAAGTATAAAAAAATGTGTTTC
TTCATTCTTTCTTCAATTCAGTTT
Done.