Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03716.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 742

Length: 1238
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39


Found at i:201 original size:40 final size:40

Alignment explanation


    Indices: 157--239  Score: 166
    Period size: 40  Copynumber: 2.1  Consensus size: 40

        147 GATGATGGAA

                                                    
        157 CTTGAAGCTTTTTCCTCCACTTCCTGTACTGTTTTTTCTT
          1 CTTGAAGCTTTTTCCTCCACTTCCTGTACTGTTTTTTCTT

                                                    
        197 CTTGAAGCTTTTTCCTCCACTTCCTGTACTGTTTTTTCTT
          1 CTTGAAGCTTTTTCCTCCACTTCCTGTACTGTTTTTTCTT

               
        237 CTT
          1 CTT

        240 CTTTCTCTCT


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  40   43  1.00

ACGTcount: A:0.10, C:0.28, G:0.10, T:0.53


Consensus pattern (40 bp):   
CTTGAAGCTTTTTCCTCCACTTCCTGTACTGTTTTTTCTT
Done.