Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03719.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3557
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35


Found at i:3421 original size:35 final size:35

Alignment explanation


    Indices: 3382--3455  Score: 139
    Period size: 35  Copynumber: 2.1  Consensus size: 35

       3372 CGTAAATAAC

                                        *      
       3382 CATGCATTTCCATGTGTTTTAGCTTTTGTATTTGG
          1 CATGCATTTCCATGTGTTTTAGCTTTTGGATTTGG

                                               
       3417 CATGCATTTCCATGTGTTTTAGCTTTTGGATTTGG
          1 CATGCATTTCCATGTGTTTTAGCTTTTGGATTTGG

                
       3452 CATG
          1 CATG

       3456 TATCTTGTTG


Statistics
Matches: 38,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  35   38  1.00

ACGTcount: A:0.15, C:0.15, G:0.22, T:0.49


Consensus pattern (35 bp):   
CATGCATTTCCATGTGTTTTAGCTTTTGGATTTGG
Done.