Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03719.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2548
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33


Found at i:2412 original size:35 final size:35

Alignment explanation


    Indices: 2373--2446  Score: 139
    Period size: 35  Copynumber: 2.1  Consensus size: 35

       2363 CGTAAATAAC

                                        *      
       2373 CATGCATTTCCATGTGTTTTAGCTTTTGTATTTGG
          1 CATGCATTTCCATGTGTTTTAGCTTTTGGATTTGG

                                               
       2408 CATGCATTTCCATGTGTTTTAGCTTTTGGATTTGG
          1 CATGCATTTCCATGTGTTTTAGCTTTTGGATTTGG

                
       2443 CATG
          1 CATG

       2447 TATCTTGTTG


Statistics
Matches: 38,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  35   38  1.00

ACGTcount: A:0.15, C:0.15, G:0.22, T:0.49


Consensus pattern (35 bp):   
CATGCATTTCCATGTGTTTTAGCTTTTGGATTTGG
Done.