Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03720.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3220
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33


Found at i:202 original size:13 final size:13

Alignment explanation


    Indices: 184--208  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        174 CGAAAATCGA

                         
        184 AAAAAGGAAGAGC
          1 AAAAAGGAAGAGC

                        
        197 AAAAAGGAAGAG
          1 AAAAAGGAAGAG

        209 TAGAATTATG


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.64, C:0.04, G:0.32, T:0.00


Consensus pattern (13 bp):   
AAAAAGGAAGAGC
Done.