Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03722.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 741

Length: 1236
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21


Found at i:265 original size:33 final size:33

Alignment explanation


    Indices: 228--379  Score: 156
    Period size: 33  Copynumber: 4.8  Consensus size: 33

        218 ATTCCAGCCA

                 *                           
        228 CAACAACCACCGCAATACCCACCACCTGCTCAG
          1 CAACAGCCACCGCAATACCCACCACCTGCTCAG

                                             
        261 CAACAGCCA-CG----A-CCACCACCTGCTCAG
          1 CAACAGCCACCGCAATACCCACCACCTGCTCAG

                      *                     *
        288 CAACAGCCACGGCAATACCCACCACCTGCTCAA
          1 CAACAGCCACCGCAATACCCACCACCTGCTCAG

              *     *     *       *           
        321 CAGCAGCCTCCGCAGTACCCACTACCTGCTCTA-
          1 CAACAGCCACCGCAATACCCACCACCTGCTC-AG

              *     *     *           
        354 CAGCAGCCTCCGCAGTACCCACCACC
          1 CAACAGCCACCGCAATACCCACCACC

        380 ATCACAACAA


Statistics
Matches: 103,  Mismatches: 9, Indels: 14
        0.82            0.07        0.11

Matches are distributed among these distances:
  27   24  0.23
  28    2  0.02
  32    3  0.03
  33   73  0.71
  34    1  0.01

ACGTcount: A:0.28, C:0.48, G:0.13, T:0.11


Consensus pattern (33 bp):   
CAACAGCCACCGCAATACCCACCACCTGCTCAG

Found at i:283 original size:27 final size:27

Alignment explanation


    Indices: 246--298  Score: 106
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        236 ACCGCAATAC

                                       
        246 CCACCACCTGCTCAGCAACAGCCACGA
          1 CCACCACCTGCTCAGCAACAGCCACGA

                                      
        273 CCACCACCTGCTCAGCAACAGCCACG
          1 CCACCACCTGCTCAGCAACAGCCACG

        299 GCAATACCCA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   26  1.00

ACGTcount: A:0.28, C:0.49, G:0.15, T:0.08


Consensus pattern (27 bp):   
CCACCACCTGCTCAGCAACAGCCACGA
Done.