Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00504.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2278
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30


Found at i:1327 original size:15 final size:15

Alignment explanation


    Indices: 1309--1337  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

       1299 TGTTGGCTTT

                           
       1309 ACAAATGCAACACCG
          1 ACAAATGCAACACCG

                          
       1324 ACAAATGCAACACC
          1 ACAAATGCAACACC

       1338 AGGAGGAGGG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.48, C:0.34, G:0.10, T:0.07


Consensus pattern (15 bp):   
ACAAATGCAACACCG

Found at i:1783 original size:3 final size:3

Alignment explanation


    Indices: 1775--1802  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

       1765 CATTTCTTAT

                                                 
       1775 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
          1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T

       1803 GCTTTGCATC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36


Consensus pattern (3 bp):   
TAA

Done.