Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03730.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3010
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31


Found at i:592 original size:12 final size:12

Alignment explanation


    Indices: 575--604  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

        565 ATGATGAACT

                        
        575 GGGTTTGCCACC
          1 GGGTTTGCCACC

                        
        587 GGGTTTGCCACC
          1 GGGTTTGCCACC

             *    
        599 GAGTTT
          1 GGGTTT

        605 ACCGTCGGTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.10, C:0.27, G:0.33, T:0.30


Consensus pattern (12 bp):   
GGGTTTGCCACC
Done.