Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03732.F11

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3197
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27


Found at i:952 original size:15 final size:16

Alignment explanation


    Indices: 932--973  Score: 52
    Period size: 15  Copynumber: 2.8  Consensus size: 16

        922 AAGAAACTGA

                            
        932 TAAACATGAAATCCA-
          1 TAAACATGAAATCCAG

             *    *         
        947 TGAACACGAAA-CCAG
          1 TAAACATGAAATCCAG

                        
        962 TAAACATGAAAT
          1 TAAACATGAAAT

        974 TGATAAACAA


Statistics
Matches: 21,  Mismatches: 4, Indels: 3
        0.75            0.14        0.11

Matches are distributed among these distances:
  14    3  0.14
  15   18  0.86

ACGTcount: A:0.52, C:0.19, G:0.12, T:0.17


Consensus pattern (16 bp):   
TAAACATGAAATCCAG
Done.