Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03745.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3708
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35


Found at i:3550 original size:5 final size:5

Alignment explanation


    Indices: 3540--3620  Score: 81
    Period size: 5  Copynumber: 16.2  Consensus size: 5

       3530 TGAGATGGGT

                                                   *     *   *      *  
       3540 GTATA GTATA GTATA GTATA GTATA GTATA GTACA GTACA GCATA GTTTA
          1 GTATA GTATA GTATA GTATA GTATA GTATA GTATA GTATA GTATA GTATA

                *        *     *     *     *     
       3590 GTATG GTATA GCATA GCATA GCATA GCATA G
          1 GTATA GTATA GTATA GTATA GTATA GTATA G

       3621 CATATAAATA


Statistics
Matches: 67,  Mismatches: 9, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   5   67  1.00

ACGTcount: A:0.37, C:0.09, G:0.22, T:0.32


Consensus pattern (5 bp):   
GTATA

Found at i:3621 original size:5 final size:5

Alignment explanation


    Indices: 3597--3624  Score: 56
    Period size: 5  Copynumber: 5.6  Consensus size: 5

       3587 TTAGTATGGT

                                             
       3597 ATAGC ATAGC ATAGC ATAGC ATAGC ATA
          1 ATAGC ATAGC ATAGC ATAGC ATAGC ATA

       3625 TAAATAAATA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   23  1.00

ACGTcount: A:0.43, C:0.18, G:0.18, T:0.21


Consensus pattern (5 bp):   
ATAGC

Done.