Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03750.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3786
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36


Found at i:3152 original size:81 final size:81

Alignment explanation


    Indices: 3043--3288  Score: 447
    Period size: 81  Copynumber: 3.0  Consensus size: 81

       3033 TGTATAATTG

                   *                        *                                
       3043 ATCTTTGCATCACATATATGCATATTTATATGCGATACAAAAGAAAGCAAATTACTACAATATTG
          1 ATCTTTGTATCACATATATGCATATTTATATGTGATACAAAAGAAAGCAAATTACTACAATATTG

            *               
       3108 CGATTTCATTGATGGA
         66 TGATTTCATTGATGGA

                                                                             
       3124 ATCTTTGTATCACATATATGCATATTTATATGTGATACAAAAGAAAGCAAATTACTACAATATTG
          1 ATCTTTGTATCACATATATGCATATTTATATGTGATACAAAAGAAAGCAAATTACTACAATATTG

             *              
       3189 TTATTTCATTGATGGA
         66 TGATTTCATTGATGGA

                           *                                                 
       3205 ATCTTTGTATCACATGTATGCATATTTATATGTGATACAAAAGAAAGCAAATTACTACAATATTG
          1 ATCTTTGTATCACATATATGCATATTTATATGTGATACAAAAGAAAGCAAATTACTACAATATTG

                            
       3270 TGATTTCATTGATGGA
         66 TGATTTCATTGATGGA

               
       3286 ATC
          1 ATC

       3289 ACATTCTGTT


Statistics
Matches: 159,  Mismatches: 6, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  81  159  1.00

ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36


Consensus pattern (81 bp):   
ATCTTTGTATCACATATATGCATATTTATATGTGATACAAAAGAAAGCAAATTACTACAATATTG
TGATTTCATTGATGGA
Done.