Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03752.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 608

Length: 1014
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26


Found at i:177 original size:12 final size:12

Alignment explanation


    Indices: 160--190  Score: 53
    Period size: 12  Copynumber: 2.6  Consensus size: 12

        150 CAGCAGCAAC

                        
        160 AGAAGAAAAAGA
          1 AGAAGAAAAAGA

                        
        172 AGAAGAAAAAGA
          1 AGAAGAAAAAGA

             *     
        184 AAAAGAA
          1 AGAAGAA

        191 GCAGTAGCAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00


Consensus pattern (12 bp):   
AGAAGAAAAAGA

Found at i:181 original size:42 final size:42

Alignment explanation


    Indices: 132--213  Score: 137
    Period size: 42  Copynumber: 2.0  Consensus size: 42

        122 GGATGAAAAA

                           *                          
        132 AAGAAAAAGAAAAAGCAGCAGCAGCAACAGAAGAAAAAGAAG
          1 AAGAAAAAGAAAAAGAAGCAGCAGCAACAGAAGAAAAAGAAG

                                 *             *    
        174 AAGAAAAAGAAAAAGAAGCAGTAGCAACAGAAGAAGAAGA
          1 AAGAAAAAGAAAAAGAAGCAGCAGCAACAGAAGAAAAAGA

        214 GACTGTTGAA


Statistics
Matches: 37,  Mismatches: 3, Indels: 0
        0.93            0.08        0.00

Matches are distributed among these distances:
  42   37  1.00

ACGTcount: A:0.65, C:0.10, G:0.24, T:0.01


Consensus pattern (42 bp):   
AAGAAAAAGAAAAAGAAGCAGCAGCAACAGAAGAAAAAGAAG
Done.