Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03757.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3633
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28


Found at i:1619 original size:29 final size:29

Alignment explanation


    Indices: 1577--1634  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       1567 TTTTCCTCCC

                                         
       1577 TTTTTGTGGCCATCAAAGCTCATAGTTTG
          1 TTTTTGTGGCCATCAAAGCTCATAGTTTG

                                         
       1606 TTTTTGTGGCCATCAAAGCTCATAGTTTG
          1 TTTTTGTGGCCATCAAAGCTCATAGTTTG

       1635 GTAGACTTTA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.21, C:0.17, G:0.21, T:0.41


Consensus pattern (29 bp):   
TTTTTGTGGCCATCAAAGCTCATAGTTTG

Found at i:2661 original size:31 final size:31

Alignment explanation


    Indices: 2623--2686  Score: 110
    Period size: 31  Copynumber: 2.1  Consensus size: 31

       2613 AGCCTTCCTT

                               *           
       2623 TGTCATACCTCTATGCCTTCGCTCATCATAG
          1 TGTCATACCTCTATGCCTTAGCTCATCATAG

                      *                    
       2654 TGTCATACCTGTATGCCTTAGCTCATCATAG
          1 TGTCATACCTCTATGCCTTAGCTCATCATAG

              
       2685 TG
          1 TG

       2687 AGTAAACGTG


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  31   31  1.00

ACGTcount: A:0.20, C:0.28, G:0.16, T:0.36


Consensus pattern (31 bp):   
TGTCATACCTCTATGCCTTAGCTCATCATAG
Done.